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Does science justify atheism?
One cannot use the scientific method to measure metaphysical ideas. Using science to understand religion is like using chemistry to prove the meaning of art, or physics to prove the concept of love.
The experience of God is subjective, and as such falls outside the realm of hard science, much like the subjective experiences of art or beauty.
Sciences, such as neuroscience, biology and anthropology can and do explain perception of metaphysical ideas, such as behaviors like love, as well as art and it's cultural significance/meaning and mechanisms and circumstances that cause them.
The scientific method can be used to measure anything that has a measurable effect on reality. If God does not, then it is effectively nonexistent.
Abstract concepts do not create universes, interact with temporal reality, or have intellectual agency. As far as we know, existence is necessarily temporal. It should be demonstrated that it is even possible for something to exist outside of space or time that can perform such great feats.